Scientific Publications

YearTitle/AuthorDocument Type
2020Algebraic multigrid for the finite pointset method
Metsch, B.; Nick, F.; Kuhnert, J.
Journal Article
2020Algebraic Wavefront Parallelization for ILU(0) Smoothing in Reservoir Simulation
Gries, Sebastian
Conference Paper
2020Analysis and Prediction of Deforming 3D Shapes using Oriented Bounding Boxes and LSTM Autoencoders
Hahner, Sara; Iza-Teran, Rodrigo; Garcke, Jochen
Conference Paper
2020Automatic analysis of crash simulations with dimensionality reduction algorithms such as PCA and t-SNE
Kracker, David; Garcke, Jochen; Schumacher, Axel; Schwanitz, P.
Conference Paper
2020Challenges of Integrative Disease Modeling in Alzheimer's Disease
Golriz Khatami, Sepehr; Robinson, C.; Birkenbihl, C.; Domingo-Fernandez, D.; Hoyt, C.T.; Hofmann-Apitius, M.
Journal Article
2020Clustering of Alzheimer's and Parkinson's disease based on genetic burden of shared molecular mechanisms
Emon, Mohammad Asif; Heinson, Ashley; Wu, Ping; Domingo-Fernández, Daniel; Sood, Meemansa; Vrooman, Henri; Corvol, Christophe; Scordis, Phil; Hofmann-Apitius, Martin; Fröhlich, Holger
Journal Article
2020Combining Machine Learning and Simulation to a Hybrid Modelling Approach: Current and Future Directions
Rüden, Laura von; Mayer, Sebastian; Sifa, Rafet; Bauckhage, Christian; Garcke, Jochen
Conference Paper
2020A Compact Spectral Descriptor for Shape Deformations
Sible, Skylar; Iza-Teran, Rodrigo; Garcke, Jochen; Aulig, Nikola; Wollstadt, Patricia
Conference Paper
2020Comprehensive analysis of tumor necrosis factor receptor TNFRSF9 (4-1BB) DNA methylation with regard to molecular and clinicopathological features, immune infiltrates, and response prediction to immunotherapy in melanoma
Fröhlich, A.; Loick, S.; Bawden, E.G.; Fietz, S.; Dietrich, J.; Diekmann, E.; Saavedra, G.; Fröhlich, H.; Niebel, D.; Sirokay, J.; Zarbl, R.; Gielen, G.H.; Kristiansen, G.; Bootz, F.; Landsberg, J.; Dietrich, D.
Journal Article
2020A Computational Approach for Mapping Heme Biology in the Context of Hemolytic Disorders
Humayun, Farah; Domingo-Fernández, Daniel; Abisheck Paul George, Ajay; Hopp, Marie-Thérèse; Syllwasschy, Benjamin; Detzel, Milena; Tapley Hoyt, Charles; Hofmann-Apitius, Martin; Imhof, Diana
Journal Article
2020Corrigendum: The Impact of Pathway Database Choice on Statistical Enrichment Analysis and Predictive Modeling: (Frontiers in Genetics, (2019), 10, 10.3389/fgene.2019.01203)
Mubeen, S.; Tapley Hoyt, C.; Gemünd, A.; Hofmann-Apitius, M.; Fröhlich, H.; Domingo-Fernandez, D.
Journal Article
2020COVID-19 Knowledge Graph: A computable, multi-modal, cause-and-effect knowledge model of COVID-19 pathophysiology
Domingo-Fernández, Daniel; Baksi, Shounak; Schultz, Bruce; Gadiya, Yojana; Kark, Reagon; Raschka, Tamara; Ebeling, Christian; Hofmann-Apitius, Martin; Kodamullil, Alpha Tom
Journal Article
2020The COVID-19 Ontology
Sargsyan, Astghik; Kodamullil, Alpha Tom; Baksi, Shounak; Darms, Johannes; Madan, Sumit; Gebel, Stephan; Keminer, Oliver; Jose, Geena Mariya; Balabin, Helena; DeLong, Lauren Nicole; Kohler, Manfred; Jacobs, Marc; Hofmann-Apitius, Martin
Journal Article
2020Data science in neurodegenerative disease: Its capabilities, limitations, and perspectives
Golriz Khatami, Sepehr; Mubeen, S.; Hofmann-Apitius, Martin
Journal Article
2020Determination of relevant mechanical properties for the production process of polyethylene by using mesoscale molecular simulation techniques
Grommes, D.; Reith, D.
Journal Article
2020Differences in cohort study data affect external validation of artificial intelligence models for predictive diagnostics of dementia - lessons for translation into clinical practice
Birkenbihl, Colin; Emon, Mohammad Asif; Vrooman, Henri; Westwood, Sarah; Lovestone, Simon; Hofmann-Apitius, Martin; Fröhlich, Holger
Journal Article
2020Drug repositioning of antiretroviral ritonavir for combinatorial therapy in glioblastoma
Rauschenbach, Laurèl; Wieland, Anja; Reinartz, Roman; Kebir, Sied; Till, Andreas; Darkwah Oppong, Marvin; Dobersalske, Celia; Ullrich, Vivien; Ahmad, Ashar; Jabbarli, Ramazan; Pierscianek, Daniela; Fröhlich, Holger; Simon, Matthias; Brüstle, Oliver; Sure, Ulrich; Glas, Martin; Scheffler, Björn
Journal Article
2020Drug2ways: Reasoning over causal paths in biological networks for drug discovery
Rivas-Barragan, Daniel; Mubeen, Sarah; Guim Bernat, Francesc; Hofmann-Apitius, Martin; Domingo-Fernández, Daniel
Journal Article
2020Entropy Numbers of Finite Dimensional Mixed-Norm Balls and Function Space Embeddings with Small Mixed Smoothness
Mayer, S.; Ullrich, T.
Journal Article
2020Evaluating the Alzheimer's disease data landscape
Birkenbihl, Colin; Salimi, Yasamin; Domingo-Fernandez, Daniel; Lovestone, Simon; Fröhlich, Holger; Hofmann-Apitius, Martin
Journal Article
2020Explain it to me - facing remote sensing challenges in the bio- and geosciences with explainable machine learning
Roscher, R.; Bohn, B.; Duarte, M.F.; Garcke, J.
Conference Paper
2020Explainable Machine Learning for Scientific Insights and Discoveries
Roscher, R.; Bohn, B.; Duarte, M.F.; Garcke, J.
Journal Article
2020The future of German MeSH: a new semi-automatic translation process and new services for search and annotation
Langnickel, Lisa; Baum, Roman; Wollnik-Korn, Gabriele; Fischer-Wagener, Brigitte; Madan, Sumit; Fluck, Juliane
Journal Article
2020Generalization of algebraic multiscale to algebraic multigrid
Ehrmann, Silvia; Gries, Sebastian; Schweitzer, Marc Alexander
Journal Article
2020GuiltyTargets: Prioritization of Novel Therapeutic Targets with Deep Network Representation Learning
Muslu, Özlem; Hoyt, Charles Tapley; Lacerda, Mauricio Pio de; Hofmann-Apitius, Martin; Fröhlich, Holger
Journal Article
2020Identifying multimodal signatures underlying the somatic comorbidity of psychosis: The COMMITMENT roadmap: Guest Editorial
Schwarz, Emanuel; Alnæs, Dag; Andreassen, Ole A.; Cao, Han; Chen, Junfang; Degenhardt, Franziska; Doncevic, Daria; Dwyer, Dominic; Eils, Roland; Erdmann, Jeanette; Herrmann, Carl; Hofmann-Apitius, Martin; Kaufmann, Tobias; Koutsouleris, Nikolaos; Kodamullil, Alpha Tom; Khuntia, Adyasha; Mucha, Sören; Nöthen, Markus M.; Paul, Riya; Pedersen, Mads L.; Quintero, Andres; Schunkert, Heribert; Sharma, Ashwini; Tost, Heike; Westlye, Lars T.; Zhang, Youcheng; Meyer-Lindenberg, Andreas
Journal Article
2020Informed Machine Learning - A Taxonomy and Survey of Integrating Knowledge into Learning Systems
Rüden, Laura von; Mayer, Sebastian; Beckh, Katharina; Georgiev, Bogdan; Giesselbach, Sven; Heese, Raoul; Kirsch, Birgit; Pfrommer, Julius; Pick, Annika; Ramamurthy, Rajkumar; Walczak, Michal; Garcke, Jochen; Bauckhage, Christian; Schuecker, Jannis
Report
2020A Landscape Analysis of Standardisation in the Field of Artificial Intelligence
Ziegler, Wolfgang
Journal Article
2020Lattice Boltzmann simulations on irregular grids: Introduction of the NATriuM library
Krämer, Andreas; Wilde, Dominik; Küllmer, Knut; Reith, Dirk; Foysi, Holger; Joppich, Wolfgang
Journal Article
2020Mathematical Modeling of Alkaline Methanol Oxidation for Design of Efficient Fuel Cells
Clees, Tanja; Nikitin, Igor; Nikitina, Lialia; Pott, Sabine; Krewer, Ulrike; Haisch, Theresa
Conference Paper
2020Multicenter Alzheimer's and Parkinson's disease immune biomarker verification study
Brosseron, Frederic; Kolbe, Carl-Christian; Santarelli, Francesco; Carvalho, Stephanie; Antonell, Anna; Castro-Gomez, Sergio; Tacik, Pawel; Namasivayam, Aishwarya Alex; Mangone, Graziella; Schneider, Reinhard; Latz, Eicke; Wüllner, Ullrich; Svenningsson, Per; Sánchez-Valle, Raquel; Molinuevo, José Luis; Corvol, Jean-Christophe; Heneka, Michael T.; Hofmann-Apitius, Martin; Springstubbe, Stephan; Fröhlich, Holger; et al.
Journal Article
2020MultiPaths. A python framework for analyzing multi-layer biological networks using diffusion algorithms
Marín-Llaó, Josep; Mubeen, Sarah; Perera-Lluna, Alexandre; Hofmann-Apitius, Martin; Picart-Armada, Sergio; Domingo-Fernández, Daniel
Journal Article
2020Neural Network Compression via Learnable Wavelet Transforms
Wolter, Moritz; Lin, Shaohui; Yao, Angela
Conference Paper
2020A note on £2p-completeness of a robust binary linear program with binary uncertainty set
Claus, M.; Simmoteit, M.
Journal Article
2020Optimal multiparametric set-up modelled for best survival outcomes in palliative treatment of liver malignancies: Unsupervised machine learning and 3 PM recommendations
Goldstein, Elisha; Yeghiazaryan, Kristina; Ahmad, Ashar; Giordano, Frank A.; Fröhlich, Holger; Golubnitschaja, Olga
Journal Article
2020The origin of the hysteresis in cyclic voltammetric response of alkaline methanol electrooxidation
Haisch, Theresa; Kubannek, Fabian; Nikitina, Lialia; Nikitin, Igor; Pott, Sabine; Clees, Tanja; Krewer, Ulrike
Journal Article
2020Parameter Identification and Model Reduction in the Design of Alkaline Methanol Fuel Cells
Clees, Tanja; Klaassen, Bernhard; Nikitin, Igor; Nikitina, Lialia; Pott, Sabine; Krewer, Ulrike; Haisch, Theresa; Kubannek, Fabian
Journal Article
2020PathME: Pathway based multi-modal sparse autoencoders for clustering of patient-level multi-omics data
Lemsara, Amina; Ouadfel, Salima; Fröhlich, Holger
Journal Article
2020Proposal of an Architecture for Terminology Management in a Research Project
Mora, Sara; Madan, Sumit; Gebel, Stephan; Giacomini, Mauro
Conference Paper
2020PS4DR: A multimodal workflow for identification and prioritization of drugs based on pathway signatures
Emon, Mohammad Asif; Domingo-Fernandez, Daniel; Tapley Hoyt, Charles; Hofmann-Apitius, Martin
Journal Article
2020Pure Functions in C: A Small Keyword for Automatic Parallelization
Süß, T.; Nagel, L.; Vef, M.-A.; Brinkmann, A.; Feld, D.; Soddemann, T.
Journal Article
2020Quantum Machine Learning. Eine Analyse zu Kompetenz, Forschung und Anwendung
Bauckhage, Christian; Brito, Eduardo; Daase, Inga; Franken, Lukas; Georgiev, Bogdan; Hecker, Dirk; Paschke, Adrian; Piatkowski, Nico; Soddemann, Thomas; Trabold, Daniel
Study
2020Realistic simulation of virtual multi-scale, multi-modal patient trajectories using Bayesian networks and sparse auto-encoders
Sood, M.; Sahay, A.; Karki, R.; Emon, M.A.; Vrooman, H.; Hofmann-Apitius, M.; Fröhlich, H.
Journal Article
2020The recovery of ridge functions on the hypercube suffers from the curse of dimensionality
Doerr, B.; Mayer, S.
Journal Article
2020SEAweb: The small RNA Expression Atlas web application
Rahman, Raza-Ur; Liebhoff, Anna-Maria; Bansal, Vikas; Fiosins, Maksims; Rajput, Ashish; Sattar, Abdul; Magruder, Daniel S.; Madan, Sumit; Sun, Ting; Gautam, Abhivyakti; Heins, Sven; Liwinski, Timur; Bethune, Jörn; Trenkwalder, Claudia; Fluck, Juliane; Mollenhauer, Brit; Bonn, Stefan
Journal Article
2020SEEDS: Data driven inference of structural model errors and unknown inputs for dynamic systems biology
Newmiwaka, Tobias; Engelhardt, Benjamin; Wendland, Philipp; Kahl, Dominik; Fröhlich, Holger; Kschischo, Maik
Journal Article
2020Semi-Lagrangian lattice Boltzmann method for compressible flows
Wilde, D.; Krämer, A.; Reith, D.; Foysi, H.
Journal Article
2020Sequence Prediction Using Spectral RNNs
Wolter, Moritz; Gall, Jürgen; Yao, Angela
Conference Paper
2020Simplex stochastic collocation for piecewise smooth functions with kinks
Fuchs, Barbara; Garcke, Jochen
Journal Article
2020Solving sorting of rolling stock problems utilizing pseudochain structures in graphs
Dörpinghaus, J.; Schrader, R.
Conference Paper
2020Systems Toxicology Approach for Testing Chemical Cardiotoxicity in Larval Zebrafish
Li, Roman; Zupanic, Anze; Talikka, Marja; Belcastro, Vincenzo; Madan, Sumit; Dörpinghaus, Jens; Berg, Colette vom; Szostak, Justyna; Martin, Florian; Peitsch, Manuel C.; Hoeng, Julia
Journal Article
2020Topological Reduction of Stationary Network Problems: Example of Gas Transport
Baldin, Anton; Clees, Tanja; Klaassen, Bernhard; Nikitin, Igor; Nikitina, Lialia
Journal Article
2020Variational Autoencoder Modular Bayesian Networks for Simulation of Heterogeneous Clinical Study Data
Gootjes-Dreesbach, Luise; Sood, Meemansa; Sahay, Akrishta; Hofmann-Apitius, Martin; Fröhlich, Holger
Journal Article
2020Voice perturbations under the stress overload in young individuals: Phenotyping and suboptimal health as predictors for cascading pathologies
Kunin, Anatolij; Sargheini, Nafiseh; Birkenbihl, Colin; Moiseeva, Natalia; Fröhlich, Holger; Golubnitschaja, Olga
Journal Article
2020What identifies a whale by its fluke? On the benefit of interpretable machine learning for whale identification
Kierdorf, J.; Garcke, J.; Behley, J.; Cheeseman, T.; Roscher, R.
Conference Paper
This publication list has been generated from the publication database Fraunhofer-Publica.