This webpage hosts the supplementary files for two publications associated with NeuroRDF work.
Iyappan & Kawalia et al. NeuroRDF: semantic integration of highly curated data to prioritize biomarker candidates in Alzheimer's disease. Journal of Biomedical Semantics 2016. Accepted
Single File Download:
Iyappan A, Bagewadi S, Page M, Hofmann-Apitius M, and Senger P.
In Proceedings of the 6th International Symposium on Semantic Mining in Biomedicine (SMBM2014). Aveiro, Portugal, 2014.
Files made available through work are:
1. Namespaces used for building the RDF schemas
2. Generated RDF Schemas
3. Literature evidences supporting proposed subnetworks
4. List of brain regions in healthy PPI network
5. Visualization of RDF sub-graph in Cytoscape
The detailed description of each file is given below.
Namespaces Used for Building the RDF Schemas
The file consists of the ontological namespaces used for generation of the different RDF schemas. The first column provides the name of the resources from which the namespaces are extracted. The second column describes the Resources and Properties used for each of the schema. The third column represents the exact namespace (URIs) used for these Resources and Properties.
Generated RDF Schemas
RDF Schemas for the five data resources are additionally provided. Below are the schemas and their respective file names:
Literature Evidences Supporting Proposed Subnetworks
For the two derived sub-networks (in Use-case Analysis in the paper), associated PMIDs retrieved during the literature survey are provided in this file. Evidences from human studies are provided in a separate column.
List of Brain Regions in Healthy PPI Network
List of brain regions that are linked to PPIs in Healthy PPI network can be found here: BrainRegions.txt